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Commands
nonmem params

bbi nonmem params

Extract the parameter estimates of models

Synopsis

Display the parameter values from completed models. If a directory is specified via --dir, get the parameters of all model runs found in that directory. Otherwise the positional argument should specify a run directory to extract parameters from.

bbi nonmem params [flags] [<run dir>]

Examples 

  # Display table of parameters for run001
  bbi nonmem params run001
  # Display table of parameters for all model runs the current directory
  bbi nonmem params --dir=.
  # Print JSON output instead of a table
  bbi nonmem params --json --dir=.

Flags

  • --dir string: name of directory to look for runs

  • --ext-file string: name of custom ext-file

  • -h, --help: help for params

  • --no-names: don't print a header of names

Inherited

  • --background: RAW NMFE OPTION - tell NONMEM not to scan stdin for control characters

  • -d, --debug: debug mode

  • --json: show JSON output, if possible

  • --licfile string: RAW NMFE OPTION - NONMEM license file to use

  • --maxlim int: RAW NMFE OPTION - set the maximum values for the buffers used by NONMEM (if 0, don't pass -maxlim to nmfe) (default 2)

  • --mpi_exec_path string: fully qualified path to mpiexec to use for NONMEM parallel operations (default "/usr/local/mpich3/bin/mpiexec")

  • --nm_version string: version of NONMEM from the configuration list to use

  • --nmqual: whether to execute with nmqual (autolog.pl)

  • --nobuild: RAW NMFE OPTION - do not build a new NONMEM executable

  • -o, --output string: output file

  • --parafile string: location of a user-provided parafile to use for parallel execution

  • --parallel: whether to run NONMEM in parallel mode

  • --parallel_timeout int: amount of time to wait for parallel operations in NONMEM before timing out (default 2147483647)

  • --prcompile: RAW NMFE OPTION - forces PREDPP compilation

  • --prdefault: RAW NMFE OPTION - do not recompile any routines other than FSUBS

  • -p, --preview: preview action, but don't actually run command

  • --prsame: RAW NMFE OPTION - tell NONMEM to skip the PREDPP compilation step

  • --threads int: number of threads to execute with locally or nodes to execute on in parallel (default 4)

  • --tprdefault: RAW NMFE OPTION - test if is okay to do -prdefault

  • -v, --verbose: verbose output

See also

  • bbi nonmem - Entry point for NONMEM-related subcommands
nonmem covcornonmem probs