Documentation
Commands
nonmem probs

bbi nonmem probs

Summarize model definitions in a directory

Synopsis

This subcommand extracts information from the *.mod files in the current directory or the specified directory. By default, it displays a table with the $PROBLEM text for each model file. If --json is passed, it prints JSON output with more details about each model (e.g., which estimation methods are present).

Note: Only model files with a *.mod extension are currently supported.

bbi nonmem probs [flags] [<directory>]

Examples 

# Output a table summarizing the $PROBLEM text for the *.mod files
# in the current directory
bbi nonmem probs
# Instead of the table, show JSON output with more details
bbi nonmem probs --json

Flags

  • -h, --help: help for probs

Inherited

  • --background: RAW NMFE OPTION - tell NONMEM not to scan stdin for control characters

  • -d, --debug: debug mode

  • --json: show JSON output, if possible

  • --licfile string: RAW NMFE OPTION - NONMEM license file to use

  • --maxlim int: RAW NMFE OPTION - set the maximum values for the buffers used by NONMEM (if 0, don't pass -maxlim to nmfe) (default 2)

  • --mpi_exec_path string: fully qualified path to mpiexec to use for NONMEM parallel operations (default "/usr/local/mpich3/bin/mpiexec")

  • --nm_version string: version of NONMEM from the configuration list to use

  • --nmqual: whether to execute with nmqual (autolog.pl)

  • --nobuild: RAW NMFE OPTION - do not build a new NONMEM executable

  • -o, --output string: output file

  • --parafile string: location of a user-provided parafile to use for parallel execution

  • --parallel: whether to run NONMEM in parallel mode

  • --parallel_timeout int: amount of time to wait for parallel operations in NONMEM before timing out (default 2147483647)

  • --prcompile: RAW NMFE OPTION - forces PREDPP compilation

  • --prdefault: RAW NMFE OPTION - do not recompile any routines other than FSUBS

  • -p, --preview: preview action, but don't actually run command

  • --prsame: RAW NMFE OPTION - tell NONMEM to skip the PREDPP compilation step

  • --threads int: number of threads to execute with locally or nodes to execute on in parallel (default 4)

  • --tprdefault: RAW NMFE OPTION - test if is okay to do -prdefault

  • -v, --verbose: verbose output

See also

  • bbi nonmem - Entry point for NONMEM-related subcommands
nonmem paramsnonmem reclean