bbi nonmem scaffold

Scaffold directory structures

Synopsis

This subcommand writes a .gitignore file to the directory specified by --cacheDir that tells Git to ignore all files in the directory except for the .gitignore file itself.

bbi nonmem scaffold [flags]

Flags

• --cacheDir string: create cache directory at path/name

• -h, --help: help for scaffold

Inherited

• --background: RAW NMFE OPTION - tell NONMEM not to scan stdin for control characters

• -d, --debug: debug mode

• --json: show JSON output, if possible

• --licfile string: RAW NMFE OPTION - NONMEM license file to use

• --maxlim int: RAW NMFE OPTION - set the maximum values for the buffers used by NONMEM (if 0, don't pass -maxlim to nmfe) (default 2)

• --mpi_exec_path string: fully qualified path to mpiexec to use for NONMEM parallel operations (default "/usr/local/mpich3/bin/mpiexec")

• --nm_version string: version of NONMEM from the configuration list to use

• --nmqual: whether to execute with nmqual (autolog.pl)

• --nobuild: RAW NMFE OPTION - do not build a new NONMEM executable

• -o, --output string: output file

• --parafile string: location of a user-provided parafile to use for parallel execution

• --parallel: whether to run NONMEM in parallel mode

• --parallel_timeout int: amount of time to wait for parallel operations in NONMEM before timing out (default 2147483647)

• --prcompile: RAW NMFE OPTION - forces PREDPP compilation

• --prdefault: RAW NMFE OPTION - do not recompile any routines other than FSUBS

• -p, --preview: preview action, but don't actually run command

• --prsame: RAW NMFE OPTION - tell NONMEM to skip the PREDPP compilation step

• --threads int: number of threads to execute with locally or nodes to execute on in parallel (default 4)

• --tprdefault: RAW NMFE OPTION - test if is okay to do -prdefault

• -v, --verbose: verbose output

See also

• bbi nonmem - Entry point for NONMEM-related subcommands