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Commands
nonmem summary

bbi nonmem summary

Summarize model results

Synopsis

Summarize the results of the specified *.lst files. By default, this prints a table of parameter estimates preceded by a lines with details about the run. Pass the --json flag to get a machine-readable output that includes more details.

The path may also be specified without the trailing ".lst". *.res files are also supported.

bbi nonmem summary [flags] <lst> [<lst>...]

Examples 

  # Summarize run001
  bbi nonmem summary run001/run001.lst
  # The extension may be omitted
  bbi nonmem summary run001/run001
  # Output JSON summary for run001 and run002
  bbi nonmem summary --json run001/run001 run002/run002

Flags

  • --ext-file string: name of custom ext-file

  • -h, --help: help for summary

  • --no-ext-file: do not use ext file

  • --no-grd-file: do not use grd file

  • --no-shk-file: do not use shk file

Inherited

  • --background: RAW NMFE OPTION - tell NONMEM not to scan stdin for control characters

  • -d, --debug: debug mode

  • --json: show JSON output, if possible

  • --licfile string: RAW NMFE OPTION - NONMEM license file to use

  • --maxlim int: RAW NMFE OPTION - set the maximum values for the buffers used by NONMEM (if 0, don't pass -maxlim to nmfe) (default 2)

  • --mpi_exec_path string: fully qualified path to mpiexec to use for NONMEM parallel operations (default "/usr/local/mpich3/bin/mpiexec")

  • --nm_version string: version of NONMEM from the configuration list to use

  • --nmqual: whether to execute with nmqual (autolog.pl)

  • --nobuild: RAW NMFE OPTION - do not build a new NONMEM executable

  • -o, --output string: output file

  • --parafile string: location of a user-provided parafile to use for parallel execution

  • --parallel: whether to run NONMEM in parallel mode

  • --parallel_timeout int: amount of time to wait for parallel operations in NONMEM before timing out (default 2147483647)

  • --prcompile: RAW NMFE OPTION - forces PREDPP compilation

  • --prdefault: RAW NMFE OPTION - do not recompile any routines other than FSUBS

  • -p, --preview: preview action, but don't actually run command

  • --prsame: RAW NMFE OPTION - tell NONMEM to skip the PREDPP compilation step

  • --threads int: number of threads to execute with locally or nodes to execute on in parallel (default 4)

  • --tprdefault: RAW NMFE OPTION - test if is okay to do -prdefault

  • -v, --verbose: verbose output

See also

  • bbi nonmem - Entry point for NONMEM-related subcommands
nonmem scaffoldversion