Submit model based on a bbi_nmbayes_model object — nmbayes_submit

Model submission consists of two steps: generating the initial values (METHOD=CHAIN run) and sampling for each chain (METHOD=BAYES or METHOD=NUTS runs).

# S3 method for bbi_nmbayes_model
submit_model(
  .mod,
  .bbi_args = NULL,
  .mode = getOption("bbr.bbi_exe_mode"),
  ...,
  .overwrite = NULL,
  .config_path = NULL,
  .wait = TRUE,
  .dry_run = FALSE
)

Arguments

.mod: The model object to submit.
.bbi_args: A named list specifying arguments to pass to bbi formatted like list("nm_version" = "nm74gf_nmfe", "json" = T, "threads" = 4). Run print_bbi_args() to see valid arguments. Note that bbr does not support changing the output directory (including through the model or global YAML files).
.mode: Either "sge", the default, to submit model(s) to the grid or "local" for local execution. This can be passed directly to this argument or set globally with options("bbr.bbi_exe_mode").
...: args passed through to bbi_exec()
.overwrite: Logical to specify whether or not to overwrite existing model output from a previous run. If NULL, the default, will defer to setting in .bbi_args or bbi.yaml. If not NULL will override any settings in .bbi_args or bbi.yaml.
.config_path: Path to a bbi configuration file. If NULL, the default, will attempt to use a bbi.yaml in the same directory as the model.
.wait: If TRUE, the default, wait for the bbi process to return before this function call returns. If FALSE function will return while bbi process runs in the background.
.dry_run: Do not submit the sampling runs; just report what command would be executed via the returned object. Note: The METHOD=CHAIN model is executed to generate the initialization values regardless of this value.

Submit model based on a `bbi_nmbayes_model` object

Arguments

See also