Reference

Stan
bbr_stan bbi_stan_model bbi_stan_gq_model	Stan models in bbr
Preparing and submitting models
add_stanmod_file() add_standata_file() add_staninit_file() add_stan_fitted_params_file()	Attaches a file to a model
build_data()	Build model input data
check_stan_model()	Check Stan model for required files and syntax errors
open_stanmod_file() open_standata_file() open_staninit_file() open_stan_fitted_params_file()	Open Stan model file in a text editor
submit_model(<bbi_stan_model>) submit_model(<bbi_stan_gq_model>)	Submit model based on a bbi_stan_model object
set_stanargs() get_stanargs()	Set or get arguments to pass when submitting Stan model
Model inspection and comparison
check_up_to_date(<bbi_stan_model>) check_up_to_date(<bbi_stan_gq_model>) check_up_to_date(<bbi_stan_summary>) check_up_to_date(<bbi_stan_gq_summary>)	Check that Stan model is up to date
model_diff(<bbi_stan_model>)	Compare Stan models
model_summary(<bbi_stan_model>)	Summarize a bbi_stan_model
stan_summary_log() stan_add_summary()	Create a tibble summarizing results for a set of Stan models
Generated quantities
copy_model_as_stan_gq()	Copy a "regular" Stan model to a generated quantities model
find_stan_gq_children()	Search for models that have a given model as the gq_parent
get_stan_gq_parent()	Get gq_parent of a standalone generated quantities model
add_stan_gq_parent() replace_all_stan_gq_parent() remove_stan_gq_parent()	Modify gq_parent of a standalone generated quantities model
Miscellaneous
install_torsten()	Install Torsten
NONMEM Bayes
bbr_nmbayes bbi_nmbayes_model	NONMEM Bayes models in bbr
Preparing and submitting models
copy_model_as_nmbayes()	Copy a "regular" NONMEM model to NONMEM Bayes model
submit_model(<bbi_nmbayes_model>)	Submit model based on a bbi_nmbayes_model object
Model inspection
chain_paths()	Return output file from each chain subdirectory
model_summary(<bbi_nmbayes_model>)	Summarize a bbi_nmbayes_model object
nm_join_bayes() nm_join_bayes_quick()	Join Bayesian model output summaries to input data
tail_lst(<bbi_nmbayes_model>) tail_output(<bbi_nmbayes_model>)	Inspect first and last lines of select files from a NONMEM Bayes model
Miscellaneous
check_nonmem_finished(<bbi_nmbayes_model>)	Check if a NONMEM Bayes model has finished running
Shared utilities
as_draws(<bbi_nmbayes_model>) as_draws(<bbi_stan_model>)	Extract posterior draws from a bbr.bayes model
read_fit_model()	Reads a fitted model object from disk
shrinkage()	Calculate shrinkage in variance of errors