Generate a table for FDA define.pdf document
fda_table(x, widths = c(0.75, 2.1, 0.6, 2.2), ...)
fda_table_file(file)a yspec object
column widths in inches; must be numeric vector with length 4
not currently used
the full path to yaml specification file
Character vector of latex code for the content of an FDA
define.pdf document. It includes a table of contents as well as data spec
tables for each dataset for a project.
spec <- load_spec_ex()
spec
#> name info unit short source
#> C c-- . commented row indicator _yspec_lookup
#> USUBJID c-- . USUBJID .
#> ID --- . ID .
#> EVID --- . event ID _yspec_lookup
#> MDV --- . MDV _yspec_lookup
#> SEQ -d- . SEQ .
#> AMT --- mg amount .
#> II --- hours II .
#> CMT --- . Compartment .
#> TAFD --- hours TAFD .
#> WT --- kg Weight .
#> EGFR --- ml/min/1.73m2 eGFR _yspec_lookup
#> STUDY cd- . Study .
#> SEX -d- . SEX _yspec_lookup
#> BQL -d- . below limit of quantification .
#> DV --- ng/mL DV .
#> DV2 --- . DV2 .
#> HAIR cd- . HAIR .
#> CLCR --- ml/min creatinine clearance .
#> ALB --- g/dL adjusted albumin _yspec_lookup
fda_table(spec)
#> [1] "\\begin{longtable}{|>{\\raggedright\\arraybackslash}p{0.75in}|>{\\raggedright\\arraybackslash}p{2.1in}|>{\\raggedright\\arraybackslash}p{0.6in}|>{\\raggedright\\arraybackslash}p{2.2in}|}"
#> [2] " \\hline"
#> [3] "VARIABLE & LABEL & TYPE & CODES \\\\ "
#> [4] " \\hline"
#> [5] "\\endhead"
#> [6] "\\hline"
#> [7] "\\multicolumn{4}{l}{\\footnotesize Continued on next page}"
#> [8] "\\endfoot"
#> [9] "\\endlastfoot"
#> [10] " \\hline"
#> [11] "C & commented rows & character & values: ., C \\\\ "
#> [12] " \\hline"
#> [13] "USUBJID & universal subject identifier & character & \\\\ "
#> [14] " \\hline"
#> [15] "ID & NONMEM ID number & numeric & \\\\ "
#> [16] " \\hline"
#> [17] "EVID & event ID indicator & numeric & \\\\ "
#> [18] " \\hline"
#> [19] "MDV & missing DV indicator & numeric & \\\\ "
#> [20] " \\hline"
#> [21] "SEQ & record type indicators & numeric & 1 = concentration, 2 = response, 3 = other \\\\ "
#> [22] " \\hline"
#> [23] "AMT & dose amount (unit: mg) & numeric & \\\\ "
#> [24] " \\hline"
#> [25] "II & interdose interval (unit: hours) & numeric & \\\\ "
#> [26] " \\hline"
#> [27] "CMT & compartment number & numeric & values: 1, 2, 3, 4 \\\\ "
#> [28] " \\hline"
#> [29] "TAFD & time after first dose (unit: hours) & numeric & \\\\ "
#> [30] " \\hline"
#> [31] "WT & baseline weight (unit: kg) & numeric & \\\\ "
#> [32] " \\hline"
#> [33] "EGFR & estimated glomerular filtration rate (unit: ml/min/1.73m2) & numeric & \\\\ "
#> [34] " \\hline"
#> [35] "STUDY & study identifier & character & 100 = The first phase 1 study, 202 = The first phase 2 study conducted only at sites 1, 2, 3 when the formulation was still oral liquid only, 303 = The renal impairment study, 203 = The second phase 2 study \\\\ "
#> [36] " \\hline"
#> [37] "SEX & SEX & numeric & 0 = male, 1 = female \\\\ "
#> [38] " \\hline"
#> [39] "BQL & DV value is below the quantitation limit & numeric & 0, 1 \\\\ "
#> [40] " \\hline"
#> [41] "DV & dependent variable (unit: ng/mL) & numeric & \\\\ "
#> [42] " \\hline"
#> [43] "DV2 & second dependent variable & numeric & \\\\ "
#> [44] " \\hline"
#> [45] "HAIR & patient hair color & character & 0 = brown, 1 = blonde, 2 = black \\\\ "
#> [46] " \\hline"
#> [47] "CLCR & creatinine clearance (unit: ml/min) & numeric & \\\\ "
#> [48] " \\hline"
#> [49] "ALB & adjusted albumin (unit: g/dL) & numeric & \\\\ "
#> [50] " \\hline"
#> [51] "\\end{longtable}"