Plots for pharmacometrics

Plots for pharmacometrics

Look and feel

See the pm_theme() help topic for functions you can use to replicate the look and feel of plots generated by this package.

Function listing

• Basic plots

  • pm_scatter(), pm_box(), pairs_plot(), split_plot()

• Residuals versus time

  • res_time(), res_tad(), res_tafd()

  • wres_time(), wres_tad(), wres_tad()

  • cwres_time(), cwres_tad(), cwres_tafd()

  • cwresi_time(), cwresi_tad(), cwresi_tafd()

• Residuals versus PRED

  • res_pred(), wres_pred(), cwres_pred()

• Residuals versus covariates

  • res_cont(), wres_cont(), cwres_cont()

  • res_cat(), wres_cat(), cwres_cat()

• NPDE plots

  • npde_time(), npde_tad(), npde_tafd()

  • npde_pred()

  • npde_hist()

  • npde_q()

  • npde_cont()

  • npde_cat()

• Pairs plots

  • eta_pairs(), pairs_plot()

• QQ plots

  • wres_q(), cwres_q(), cwresi_q(), res_q()

• Histograms

  • cont_hist(), eta_hist(), cwres_hist(), cwresi_hist()

• List plots

  • pm_box_list(), pm_scatter_list()

  • list_plot_x(), list_plot_y(), list_plot_xy()

  • cont_hist_list()

• Faceted plots

  • wrap_cont_cont(), wrap_cont_time(), wrap_dv_preds(), wrap_eta_cont()

  • wrap_hist()

  • wrap_cont_cat()

• Standard paneled displays

  • eta_covariate(), npde_covariate(), cwres_covariate()

  • npde_panel(), cwres_panel()

  • npde_hist_q(), cwres_hist_q()

  • npde_scatter(), cwres_scatter()

• Other plots

  • dv_pred_ipred()

• Layers

  • smooth: layer_s(), hline: layer_h(), abline: layer_a()

  • combinations: layer_sa(), layer_sh()

• Customization

  • pm_opts()

  • rot_x(), rot_y(), pm_theme(), theme_plain()

• Arrangement

  • pm_grid()

• Labeling

  • pm_gg_labs(), pm_relabel() - for several aesthetics on arbitrary gg plots

  • pmp_relabel_wrap() - relabel facet strip labels in wrap plots

  • pmp_relabel_pairs() - relabel strip and axis labels in pairs plots

  • relabel_at() - relabel plots in a list by name

  • pm_label_columns(), pm_label_rm() - add or remove labels to data sets

  • pm_label_break() - labeller for wrapping strip text at a character width

• Column names and aliases

  • pm_set_aliases(), pm_aliases(), pm_clear_aliases(), pm_show_canonical()

  • pm_col_id(), pm_col_tad()

• Example data sets

  • pmplots_data(), pmplots_data_obs(), pmplots_data_id()